Recent & Upcoming Events
May 31, 2018
Fourth Annual CPCP Retreat
One-day event featuring presentations and posters by CPCP members with opportunities for networking
Feb 20, 2018
Lessons (Not) to be Learned from the Debate about Genetic Privacy by Dr. Ellen Wright Clayton
CPCP Privacy/Fairness Seminar
Oct 31, 2017
The Fairsquare Project: Countering Programs that Discriminate by Dr. Aws Albarghouthi
CPCP Privacy/Fairness Seminar
Training Resources
CPCP 2018 Retreat: Modeling Hierarchical Structure using Multiscale Factorization - Tracking Early Decline in Alzheimer's Disease Symposium Video
Talk by Vamsi Ithapu
CPCP 2018 Retreat: Graph Total Variation Regularization for fMRI Neural Decoding Symposium Video
Talk by Rebecca Willett
Recent Publications
CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology. Bernstein M, Ma Z, Gleicher M, Dewey C. iScience 24:101913, 2021
Performing group difference testing on graph structured data from GANs: Analysis and applications in neuroimaging. Dinh TQ, Xiong Y, Huang Z, Vo T, Mishra A, Kim WH, Ravi S, Singh V. IEEE Transactions on Pattern Analysis and Machine Intelligence, 2020
FairALM: Augmented Lagrangian method for training fair models with little regret. Lokhande VS, Akash AK, Ravi SN, Singh V. Proceedings of the European Conference on Computer Vision (ECCV), 2020
Generating accurate pseudo-labels in semi-supervised learning and avoiding overconfident predictions via Hermite polynomial activations. Lokhande VS, Tasneeyapant S, Venkatesh A, Ravi S, Singh V. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2020
Recent Resources
HiC-Reg software
HiC-Reg is a tool to predict Hi-C chromatin contact counts from one-dimensional regulatory signals.
Datasets for practical model selection for prospective virtual screening data
This repository contains datasets for the manuscript "Practical model selection for prospective virtual screening." It includes chemical screening data for several protein-protein interaction drug targets.
BaselineRegularization software
BaselineRegularization is an R package for identifying adverse or beneficial drug effects from longitudinal observational data such as electronic health records. It is designed to work with the OMOP Common Data Model while having the flexibility to work with other custom databases and a variety of data sources.
atSNP Search software
atSNP Search is a web tool that evaluates the impact of single nucleotide polymorphisms (SNPs) on transcription factor binding (TF) in silico. It statistically quantifies whether any given SNP from the dbSNP Build 144 is likely to lead to gain and/or loss of function for binding of any TF from existing TF binding profile databases.
RKColocal software
RKColocal provides baisc functions for dual-channel image input/output and colocalization analysis. RKColocal includes tools to display joint distribution of pixel intensities for colocalization analysis, evaluate the average degree of colocalization in a given region, quantify the degree of colocalization at each pixel and identify colocalized region.